A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-06-18, 17:22 BST
based on data in:
/Users/rmcolq/Work/git/pathbio3/analysis/Trypanosoma/star
General Statistics
| Sample Name | % Aligned | M Aligned |
|---|---|---|
| SRR7207625 | 61.5% | 14.4M |
| SRR7207626 | 61.1% | 14.3M |
| SRR7207627 | 61.5% | 14.2M |
| SRR7207628 | 70.5% | 16.5M |
| SRR7207629 | 70.8% | 16.5M |
| SRR7207630 | 70.6% | 16.4M |
| SRR7207631 | 68.3% | 16.1M |
| SRR7207632 | 68.3% | 16.1M |
| SRR7207633 | 68.4% | 16.7M |
| SRR7207634 | 68.4% | 16.8M |
| SRR7207635 | 68.4% | 17.4M |
| SRR7207636 | 68.4% | 17.4M |
| SRR7207637 | 67.4% | 14.5M |
| SRR7207638 | 67.4% | 14.5M |
| SRR7207639 | 67.0% | 17.0M |
| SRR7207640 | 67.0% | 17.1M |
| SRR7207641 | 67.5% | 16.1M |
| SRR7207642 | 67.5% | 16.1M |
STAR
STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.