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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.22.2

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-06-18, 17:22 BST based on data in: /Users/rmcolq/Work/git/pathbio3/analysis/Trypanosoma/star

        General Statistics

        Showing 18/18 rows and 2/2 columns.
        Sample Name% AlignedM Aligned
        SRR7207625
        61.5%
        14.4M
        SRR7207626
        61.1%
        14.3M
        SRR7207627
        61.5%
        14.2M
        SRR7207628
        70.5%
        16.5M
        SRR7207629
        70.8%
        16.5M
        SRR7207630
        70.6%
        16.4M
        SRR7207631
        68.3%
        16.1M
        SRR7207632
        68.3%
        16.1M
        SRR7207633
        68.4%
        16.7M
        SRR7207634
        68.4%
        16.8M
        SRR7207635
        68.4%
        17.4M
        SRR7207636
        68.4%
        17.4M
        SRR7207637
        67.4%
        14.5M
        SRR7207638
        67.4%
        14.5M
        SRR7207639
        67.0%
        17.0M
        SRR7207640
        67.0%
        17.1M
        SRR7207641
        67.5%
        16.1M
        SRR7207642
        67.5%
        16.1M

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

        Created with MultiQC

        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

        Created with MultiQC

        MultiQC v1.22.2 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.